PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472903.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 734aa    MW: 81521 Da    PI: 9.739
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472903.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.2e-111770248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                      rW t+E++ll++av+++G+++W+++a +++         +++ +c++++++++
   XP_016472903.1 17 SRWGTWEELLLACAVNRYGTKSWDSVAVELQkrstapaRLLSPHNCRLKYLDLK 70
                     69************************************889*********9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.4E-51572IPR001005SANT/Myb domain
SuperFamilySSF466899.4E-51674IPR009057Homeodomain-like
PfamPF002496.2E-111770IPR001005SANT/Myb domain
CDDcd001671.72E-51870No hitNo description
SuperFamilySSF473701.3E-16334446IPR001487Bromodomain
SMARTSM002973.7E-15339448IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.9E-14341471IPR001487Bromodomain
CDDcd043694.95E-14353443No hitNo description
PfamPF004393.5E-11354433IPR001487Bromodomain
PROSITE profilePS5001412.209358429IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MAKPDGTVEK SSEEEESRWG TWEELLLACA VNRYGTKSWD SVAVELQKRS TAPARLLSPH  60
NCRLKYLDLK RRYSNKCNGN GNVNDDDEDK EKTVCVPLLE ELRKLRVAEL RREVERYDLS  120
IVSLQLKKRR LEEERERSLQ QTENGESKSD LVKNEWRGAN NEKFEETEIG IKPEDKSSPE  180
LVAADEASEE ASDKDQQSVN ESSSTDPKHS CSLKNSAENE DKAEPVRTGT VKTEPLQTGS  240
IKEEPDKCGE ERPVREDSCN GSSDSVEKPP VGVTMKVEPV SESPELVESM AESKGGEEGT  300
KENSDVQSSV SKSRKKLDDI VVGGCSSGDE REKENRSPAV KEIPVESQPL IVFLEKIRSH  360
KLGSMFERRL ESQEAENYSN LIRQHVDLEM VQTWLENGRY ISCKSKFFRD LLLLVSNAIV  420
FFKKNSSEFV AATELRQLIL KEISRTKAKS YSLSDKQTSL KSASLSQKEI TKPSDSLLLK  480
TNISGSMIVC RKRSSITAKA SPSSSGGDKK REQTITRPAE KLVVDTLQQP SQLATNAGEN  540
RITKKRTRDR FASGSASLNK NDKSRPNTTS IKNLAAVVDK NQGERESSSQ HPQSKSESRN  600
DQSNTDVKKR GVANFLNRMK QSSSSNSGLL LDALKSRPLS SGSKGGSEQK KNESGTDGGR  660
KEPASSKTHQ KKEPASSKNP EAKQAKEKGS PMKKNVGRPP KRGADPSPPS RKRSREGAES  720
AAIPPKQPRK RSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016472903.10.0PREDICTED: uncharacterized protein LOC107794870
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.16e-45DNA-binding bromodomain-containing protein